Variant report

Variant	rs6929203
Chromosome Location	chr6:144764064-144764065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs36000065	1.00[EUR][1000 genomes]
rs4364502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57126147	1.00[EUR][1000 genomes]
rs57360253	1.00[EUR][1000 genomes]
rs57902986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58152229	1.00[EUR][1000 genomes]
rs60896767	1.00[EUR][1000 genomes]
rs61620395	1.00[EUR][1000 genomes]
rs6570629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570631	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73597078	1.00[EUR][1000 genomes]
rs73597094	1.00[EUR][1000 genomes]
rs73598970	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598995	1.00[EUR][1000 genomes]
rs7740206	1.00[EUR][1000 genomes]
rs7747024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496969	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886739	chr6:144719765-144796516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144740800-144787600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:144741000-144801800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:144743000-144780200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr6:144753000-144771200	Weak transcription	Stomach Mucosa	stomach
5	chr6:144755400-144764400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:144755400-144770400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:144755400-144781200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:144755600-144780800	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:144755800-144764400	Strong transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:144756000-144810600	Weak transcription	Small Intestine	intestine
11	chr6:144756800-144764200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:144756800-144766400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:144756800-144772600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:144756800-144777200	Strong transcription	HSMM	muscle
15	chr6:144756800-144780200	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:144757000-144764600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:144757000-144771000	Strong transcription	Adipose Nuclei	Adipose
18	chr6:144757400-144773800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:144757600-144767600	Strong transcription	HUVEC	blood vessel
20	chr6:144757800-144767200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:144758200-144764200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:144758200-144764600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:144758200-144770800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:144758400-144764400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:144758600-144764400	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:144758600-144764600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:144759400-144764200	Strong transcription	Fetal Kidney	kidney
28	chr6:144760000-144764200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
29	chr6:144760200-144768400	Weak transcription	HMEC	breast
30	chr6:144760400-144764600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr6:144760800-144764200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
32	chr6:144761000-144764400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
33	chr6:144761000-144764400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:144761000-144764600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
35	chr6:144761000-144764600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:144761200-144764200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:144761200-144764200	Strong transcription	Fetal Heart	heart
38	chr6:144761200-144764400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
39	chr6:144761200-144766200	Weak transcription	Fetal Brain Male	brain
40	chr6:144761400-144764200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:144761400-144764200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
42	chr6:144761600-144764200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
43	chr6:144762200-144767200	Weak transcription	HSMMtube	muscle
44	chr6:144762200-144780400	Weak transcription	Psoas Muscle	Psoas
45	chr6:144762600-144764400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:144762600-144764400	Strong transcription	Primary T cells from cord blood	blood
47	chr6:144762800-144764200	Strong transcription	HepG2	liver
48	chr6:144762800-144771200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr6:144762800-144780000	Weak transcription	Colon Smooth Muscle	Colon
50	chr6:144762800-144788200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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