Variant report

Variant	rs11973165
Chromosome Location	chr7:98429554-98429555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10953274	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4391356	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4495350	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4729493	0.87[EUR][1000 genomes]
rs4729497	0.83[EUR][1000 genomes]
rs4729498	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6465724	0.87[EUR][1000 genomes]
rs73147822	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73147824	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73147825	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73147827	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73147830	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73147832	0.83[EUR][1000 genomes]
rs73159490	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98424400-98443200	Weak transcription	Right Atrium	heart
2	chr7:98424600-98434600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:98425400-98432600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:98425600-98431200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:98425800-98434600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:98429200-98429600	Enhancers	Fetal Heart	heart
7	chr7:98429200-98429800	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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