Variant report

Variant	rs4495350
Chromosome Location	chr7:98434918-98434919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98050415..98051033-chr7:98434102..98435050,3	MCF-7	breast:
2	chr7:98062651..98063297-chr7:98434245..98435087,4	K562	blood:
3	chr7:98374772..98375724-chr7:98434494..98435108,2	MCF-7	breast:
4	chr7:98384114..98385067-chr7:98434129..98435039,4	MCF-7	breast:
5	chr7:98062653..98063744-chr7:98434185..98435104,3	MCF-7	breast:
6	chr7:98062277..98063327-chr7:98433908..98435029,7	MCF-7	breast:
7	chr7:98374416..98375671-chr7:98433991..98435130,4	MCF-7	breast:
8	chr7:98384256..98385048-chr7:98434572..98435114,2	MCF-7	breast:
9	chr7:98362120..98363035-chr7:98433935..98434943,3	K562	blood:
10	chr7:97923862..97924526-chr7:98434595..98435120,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10953274	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11973165	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4391356	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729493	0.85[EUR][1000 genomes]
rs4729497	0.89[EUR][1000 genomes]
rs4729498	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6465724	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73147822	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73147824	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73147825	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73147827	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73147830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73147832	0.89[EUR][1000 genomes]
rs73147835	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98424400-98443200	Weak transcription	Right Atrium	heart
2	chr7:98433200-98444200	Weak transcription	Brain Germinal Matrix	brain
3	chr7:98434600-98435000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:98434600-98435000	Weak transcription	Fetal Brain Female	brain
5	chr7:98434600-98435200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:98434600-98435200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:98434600-98435200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:98434600-98435200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:98434600-98435400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:98434600-98435400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:98434600-98435600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:98434800-98435000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:98434800-98435000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:98434800-98435200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:98434800-98435200	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr7:98434800-98435200	Enhancers	GM12878-XiMat	blood
17	chr7:98434800-98435400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr7:98434800-98435400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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