Variant report

Variant	rs73147835
Chromosome Location	chr7:98444887-98444888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10953274	0.86[EUR][1000 genomes]
rs4391356	0.84[EUR][1000 genomes]
rs4495350	0.80[EUR][1000 genomes]
rs4729493	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729497	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729498	0.86[EUR][1000 genomes]
rs6465724	0.86[EUR][1000 genomes]
rs73147815	1.00[ASN][1000 genomes]
rs73147822	0.86[EUR][1000 genomes]
rs73147825	0.86[EUR][1000 genomes]
rs73147830	0.86[EUR][1000 genomes]
rs73147832	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159489	1.00[ASN][1000 genomes]
rs73159490	1.00[ASN][1000 genomes]
rs882394	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98438400-98446600	Weak transcription	Aorta	Aorta
2	chr7:98439600-98445200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:98442200-98445000	Weak transcription	Brain Anterior Caudate	brain
4	chr7:98443000-98445400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:98443800-98445400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:98443800-98445600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:98444400-98445400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:98444400-98445400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:98444400-98445400	Weak transcription	Brain Germinal Matrix	brain
10	chr7:98444400-98445600	Strong transcription	Brain Angular Gyrus	brain
11	chr7:98444400-98445800	Weak transcription	Fetal Brain Male	brain
12	chr7:98444600-98445000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:98444800-98445000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:98444800-98445000	Strong transcription	Fetal Brain Female	brain
15	chr7:98444800-98447800	ZNF genes & repeats	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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