Variant report

Variant	rs73159490
Chromosome Location	chr7:98412315-98412316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10953274	0.84[EUR][1000 genomes]
rs11973165	0.81[EUR][1000 genomes]
rs4391356	0.82[EUR][1000 genomes]
rs4729493	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729497	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729498	0.84[EUR][1000 genomes]
rs6465724	0.84[EUR][1000 genomes]
rs73147815	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73147822	0.84[EUR][1000 genomes]
rs73147825	0.84[EUR][1000 genomes]
rs73147830	0.84[EUR][1000 genomes]
rs73147832	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73147835	1.00[ASN][1000 genomes]
rs73159489	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882394	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98406400-98413800	Weak transcription	Right Atrium	heart
2	chr7:98408600-98413600	Weak transcription	Fetal Brain Female	brain
3	chr7:98409200-98413800	Weak transcription	Fetal Brain Male	brain
4	chr7:98409200-98414000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:98409200-98414200	Weak transcription	Right Ventricle	heart
6	chr7:98409200-98414800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:98409200-98415000	Weak transcription	Fetal Kidney	kidney
8	chr7:98409200-98416400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:98409200-98416400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:98409200-98416600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:98409200-98416600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:98409200-98420000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:98409200-98420000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:98409400-98412400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:98409400-98415000	Weak transcription	Esophagus	oesophagus
16	chr7:98409400-98416400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:98412200-98412400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:98412200-98412600	Active TSS	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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