Variant report

Variant	rs4729498
Chromosome Location	chr7:98435520-98435521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10953274	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11973165	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4391356	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4495350	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4729493	0.91[EUR][1000 genomes]
rs4729497	0.95[EUR][1000 genomes]
rs6465724	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73147822	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73147824	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73147825	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73147827	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73147830	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73147832	0.95[EUR][1000 genomes]
rs73147835	0.86[EUR][1000 genomes]
rs73159490	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98424400-98443200	Weak transcription	Right Atrium	heart
2	chr7:98433200-98444200	Weak transcription	Brain Germinal Matrix	brain
3	chr7:98434600-98435600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:98435000-98438000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:98435200-98436200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:98435200-98436400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:98435200-98436800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:98435200-98437600	Weak transcription	GM12878-XiMat	blood
9	chr7:98435200-98443800	Weak transcription	Fetal Brain Female	brain
10	chr7:98435400-98436400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:98435400-98436400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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