Variant report
| Variant | rs11975894 |
|---|---|
| Chromosome Location | chr7:112258216-112258217 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:7)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C7orf53-2 | chr7:112258108-112258333 | XLOC_006210 |
| 2 | lnc-C7orf53-2 | chr7:112257752-112258333 | XLOC_006210 |
| 3 | lnc-C7orf53-2 | chr7:112258108-112258333 | XLOC_006210 |
| 4 | lnc-C7orf53-2 | chr7:112258126-112258333 | XLOC_006210 |
| 5 | lnc-C7orf53-2 | chr7:112258120-112258333 | NR_110159 |
| 6 | lnc-C7orf53-2 | chr7:112258120-112258333 | NR_110160 |
| 7 | lnc-C7orf53-2 | chr7:112257559-112258333 | NONHSAT122792 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11971502 | 1.00[EUR][1000 genomes] |
| rs11973377 | 1.00[EUR][1000 genomes] |
| rs11974313 | 1.00[EUR][1000 genomes] |
| rs11974703 | 1.00[EUR][1000 genomes] |
| rs16873392 | 1.00[EUR][1000 genomes] |
| rs17159708 | 1.00[EUR][1000 genomes] |
| rs28615445 | 1.00[EUR][1000 genomes] |
| rs3109110 | 1.00[EUR][1000 genomes] |
| rs3109111 | 1.00[EUR][1000 genomes] |
| rs6466411 | 1.00[EUR][1000 genomes] |
| rs6969144 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6971255 | 1.00[EUR][1000 genomes] |
| rs6974737 | 1.00[EUR][1000 genomes] |
| rs7779086 | 1.00[EUR][1000 genomes] |
| rs7811092 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | nsv889055 | chr7:112174089-112353440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
