Variant report

Variant	rs6974737
Chromosome Location	chr7:112076515-112076516
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112058803..112077296-chr7:112087519..112096464,50	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11971175	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs11971502	1.00[EUR][1000 genomes]
rs11971939	1.00[ASW][hapmap];0.83[LWK][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs11973377	1.00[EUR][1000 genomes]
rs11973971	1.00[EUR][1000 genomes]
rs11974313	1.00[EUR][1000 genomes]
rs11974703	1.00[EUR][1000 genomes]
rs11975894	1.00[EUR][1000 genomes]
rs11981674	1.00[EUR][1000 genomes]
rs11983419	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs16873392	1.00[EUR][1000 genomes]
rs17159708	1.00[EUR][1000 genomes]
rs28615445	1.00[EUR][1000 genomes]
rs3109110	1.00[EUR][1000 genomes]
rs3109111	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6466411	1.00[EUR][1000 genomes]
rs6961336	1.00[EUR][1000 genomes]
rs6969144	1.00[EUR][1000 genomes]
rs6971255	1.00[EUR][1000 genomes]
rs73424473	1.00[EUR][1000 genomes]
rs7779086	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1801262	chr7:112071795-112104179	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
3	chr7:112065800-112079800	Weak transcription	Pancreas	Pancrea
4	chr7:112068600-112077200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:112071000-112077000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:112073800-112082400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:112074000-112077200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:112075400-112076600	Enhancers	A549	lung
9	chr7:112075600-112076800	Weak transcription	HMEC	breast
10	chr7:112075600-112077000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:112075600-112077000	Weak transcription	Hela-S3	cervix
12	chr7:112075600-112077000	Weak transcription	HSMMtube	muscle
13	chr7:112075600-112079600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:112075800-112076600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:112075800-112076800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:112075800-112076800	Weak transcription	NH-A	brain
17	chr7:112075800-112077000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:112075800-112077000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:112075800-112077000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:112075800-112089800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:112076400-112077800	Enhancers	NHEK	skin

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