Variant report

Variant	rs11981674
Chromosome Location	chr7:111980365-111980366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:111979755..111984894-chr7:111986750..111988962,5	K562	blood:
2	chr7:111975441..111977682-chr7:111980035..111981752,2	MCF-7	breast:
3	chr7:111977606..111981678-chr7:112089523..112092927,4	K562	blood:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10226760	1.00[ASN][1000 genomes]
rs10256618	1.00[ASN][1000 genomes]
rs10273549	1.00[ASN][1000 genomes]
rs10279583	1.00[ASN][1000 genomes]
rs11971175	1.00[EUR][1000 genomes]
rs11971939	1.00[EUR][1000 genomes]
rs11973377	1.00[EUR][1000 genomes]
rs11973971	1.00[EUR][1000 genomes]
rs11974703	1.00[EUR][1000 genomes]
rs11983419	1.00[EUR][1000 genomes]
rs16873392	1.00[EUR][1000 genomes]
rs17159708	1.00[EUR][1000 genomes]
rs28571988	1.00[ASN][1000 genomes]
rs3109110	1.00[EUR][1000 genomes]
rs3109111	1.00[EUR][1000 genomes]
rs3128431	1.00[ASN][1000 genomes]
rs58155631	1.00[ASN][1000 genomes]
rs59603987	1.00[ASN][1000 genomes]
rs6466411	1.00[EUR][1000 genomes]
rs6955444	1.00[ASN][1000 genomes]
rs6961336	1.00[EUR][1000 genomes]
rs6970165	1.00[ASN][1000 genomes]
rs6971255	1.00[EUR][1000 genomes]
rs6974737	1.00[EUR][1000 genomes]
rs73424473	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740358	1.00[ASN][1000 genomes]
rs7779086	1.00[EUR][1000 genomes]
rs7787583	1.00[ASN][1000 genomes]
rs7802559	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
3	nsv1020212	chr7:111944370-112032596	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv5902	chr7:111952128-111997265	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111926600-111982200	Weak transcription	Right Ventricle	heart
2	chr7:111931000-111981000	Weak transcription	HSMMtube	muscle
3	chr7:111943000-111985200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:111945200-111986800	Weak transcription	Hela-S3	cervix
5	chr7:111947400-111981000	Weak transcription	Brain Angular Gyrus	brain
6	chr7:111956200-111982400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:111956200-111983200	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:111958800-111987400	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:111959000-111982400	Weak transcription	HUVEC	blood vessel
10	chr7:111960800-111990000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:111961000-111987000	Weak transcription	Small Intestine	intestine
12	chr7:111961800-111986000	Weak transcription	K562	blood
13	chr7:111962200-111982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:111963600-111980800	Weak transcription	NHEK	skin
15	chr7:111963800-111984400	Weak transcription	HMEC	breast
16	chr7:111963800-111987200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:111965800-111981800	Weak transcription	Colonic Mucosa	Colon
18	chr7:111965800-111985400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:111965800-111986800	Weak transcription	GM12878-XiMat	blood
20	chr7:111966000-111981600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:111966000-111983200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:111966000-111985800	Weak transcription	Spleen	Spleen
23	chr7:111966000-111989600	Weak transcription	Gastric	stomach
24	chr7:111966400-111981000	Weak transcription	Ovary	ovary
25	chr7:111966400-111991400	Weak transcription	Esophagus	oesophagus
26	chr7:111966600-111981000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:111966600-111981600	Weak transcription	Fetal Stomach	stomach
28	chr7:111966600-111984800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:111966600-111989600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:111966600-112000800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:111967600-111980800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:111967600-111982200	Weak transcription	Aorta	Aorta
33	chr7:111967600-111983600	Weak transcription	Pancreas	Pancrea
34	chr7:111967600-111986800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr7:111968400-111980400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr7:111968400-111985200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:111968600-111981800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr7:111969000-111982600	Weak transcription	NH-A	brain
39	chr7:111969400-111985400	Strong transcription	Dnd41	blood
40	chr7:111971000-111984000	Strong transcription	Primary T cells from cord blood	blood
41	chr7:111971800-111982800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:111972800-111981600	Weak transcription	Fetal Intestine Small	intestine
43	chr7:111973400-111984400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:111974600-111985400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr7:111974800-111980800	Strong transcription	Primary B cells from cord blood	blood
46	chr7:111974800-111985000	Strong transcription	Liver	Liver
47	chr7:111975000-111980800	Weak transcription	Fetal Kidney	kidney
48	chr7:111975400-111984400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr7:111977200-111983200	Weak transcription	Fetal Heart	heart
50	chr7:111977400-111981200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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