Variant report

Variant	rs6971255
Chromosome Location	chr7:112190619-112190620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112190230..112191165-chr7:112508564..112509921,10	K562	blood:
2	chr7:112190261..112191145-chr7:113061834..113062368,2	K562	blood:
3	chr7:112190294..112191278-chr7:112753982..112754649,4	MCF-7	breast:
4	chr7:112189971..112191181-chr7:112508937..112509930,9	MCF-7	breast:
5	chr7:112190039..112191145-chr7:113350058..113351102,4	MCF-7	breast:
6	chr7:112190093..112191109-chr7:112508990..112509753,4	MCF-7	breast:
7	chr7:112190294..112191180-chr7:113061506..113062330,4	MCF-7	breast:
8	chr7:112190456..112191281-chr7:112538487..112539375,8	MCF-7	breast:
9	chr7:112190224..112190771-chr7:112538559..112539340,3	K562	blood:
10	chr7:112188001..112190741-chr7:112193794..112196488,2	K562	blood:
11	chr7:112190169..112191177-chr7:112538380..112539293,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11971502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11971939	1.00[EUR][1000 genomes]
rs11973377	1.00[EUR][1000 genomes]
rs11974313	1.00[EUR][1000 genomes]
rs11974703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975894	1.00[EUR][1000 genomes]
rs11981674	1.00[EUR][1000 genomes]
rs11983419	1.00[EUR][1000 genomes]
rs16873392	1.00[EUR][1000 genomes]
rs17159708	1.00[EUR][1000 genomes]
rs28615445	1.00[EUR][1000 genomes]
rs3109110	1.00[EUR][1000 genomes]
rs3109111	1.00[EUR][1000 genomes]
rs6466411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6974737	1.00[EUR][1000 genomes]
rs7779086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811092	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1801382	chr7:112167436-112205264	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv971209	chr7:112189312-112201673	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112190600-112190800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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