Variant report
| Variant | rs6466411 |
|---|---|
| Chromosome Location | chr7:112156435-112156436 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:112118477..112121332-chr7:112154605..112156995,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| NPM1P14 | TF binding region |
| ENSG00000181016 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11971175 | 1.00[EUR][1000 genomes] |
| rs11971502 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11971939 | 1.00[EUR][1000 genomes] |
| rs11973377 | 1.00[EUR][1000 genomes] |
| rs11974313 | 1.00[EUR][1000 genomes] |
| rs11974703 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11975894 | 1.00[EUR][1000 genomes] |
| rs11981674 | 1.00[EUR][1000 genomes] |
| rs11983419 | 1.00[EUR][1000 genomes] |
| rs16873392 | 1.00[EUR][1000 genomes] |
| rs17159708 | 1.00[EUR][1000 genomes] |
| rs28615445 | 1.00[EUR][1000 genomes] |
| rs3109110 | 1.00[EUR][1000 genomes] |
| rs3109111 | 1.00[EUR][1000 genomes] |
| rs6969144 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6971255 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6974737 | 1.00[EUR][1000 genomes] |
| rs73424473 | 1.00[EUR][1000 genomes] |
| rs7779086 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7811092 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
