Variant report

Variant	rs11978010
Chromosome Location	chr7:50521707-50521708
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11575551	1.00[AMR][1000 genomes]
rs11575552	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11575557	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11575565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11575568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11575570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11575574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976368	0.90[AFR][1000 genomes]
rs11977135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133817	0.88[AFR][1000 genomes]
rs17133826	0.88[AFR][1000 genomes]
rs17133832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36117815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50518800-50522600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:50518800-50535400	Weak transcription	Pancreas	Pancrea
3	chr7:50518800-50535600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:50518800-50535600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:50518800-50535600	Weak transcription	HepG2	liver
6	chr7:50519000-50523400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:50519000-50523400	Weak transcription	Liver	Liver
8	chr7:50519000-50523400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:50519000-50523800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:50519000-50523800	Weak transcription	Fetal Intestine Small	intestine
11	chr7:50519000-50524400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr7:50519000-50529400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:50519200-50523400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:50519200-50524000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:50519200-50524000	Weak transcription	Fetal Intestine Large	intestine
16	chr7:50519400-50522600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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