Variant report

Variant	rs36117815
Chromosome Location	chr7:50508631-50508632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50507899..50510856-chr7:50521502..50523309,2	K562	blood:
2	chr7:50505120..50506790-chr7:50508425..50510796,2	K562	blood:
3	chr7:50508600..50510665-chr7:50513721..50515795,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11575551	1.00[AMR][1000 genomes]
rs11575552	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11575557	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11575565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11575568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11575570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11575574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11975450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11976368	0.90[AFR][1000 genomes]
rs11977135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133817	0.88[AFR][1000 genomes]
rs17133826	0.88[AFR][1000 genomes]
rs17133832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50486200-50513200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:50495200-50513000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:50495200-50517200	Weak transcription	Stomach Mucosa	stomach
4	chr7:50495600-50513800	Weak transcription	HepG2	liver
5	chr7:50496000-50513000	Weak transcription	Gastric	stomach
6	chr7:50496200-50517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:50499400-50513000	Weak transcription	Psoas Muscle	Psoas
8	chr7:50500000-50513400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:50500600-50513000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:50501000-50517400	Weak transcription	Esophagus	oesophagus
11	chr7:50502200-50513600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:50502400-50517200	Weak transcription	Small Intestine	intestine
13	chr7:50503000-50513000	Weak transcription	Spleen	Spleen
14	chr7:50503600-50512800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:50503800-50511600	Weak transcription	K562	blood
16	chr7:50503800-50512400	Weak transcription	Placenta	Placenta
17	chr7:50504200-50511400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:50504200-50513200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:50504200-50513800	Weak transcription	NH-A	brain
20	chr7:50504400-50509600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:50504400-50511000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:50504400-50513000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr7:50504400-50513000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:50504600-50510000	Strong transcription	Primary T cells from cord blood	blood
25	chr7:50504600-50511800	Strong transcription	Fetal Thymus	thymus
26	chr7:50504600-50513000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:50504600-50513000	Weak transcription	Brain Substantia Nigra	brain
28	chr7:50504600-50513000	Strong transcription	Dnd41	blood
29	chr7:50504600-50513200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr7:50504600-50513400	Weak transcription	Brain Angular Gyrus	brain
31	chr7:50504600-50513800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:50504600-50515000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr7:50504600-50517200	Weak transcription	Pancreas	Pancrea
34	chr7:50504800-50509400	Strong transcription	Fetal Intestine Small	intestine
35	chr7:50504800-50513000	Weak transcription	Hela-S3	cervix
36	chr7:50504800-50513000	Weak transcription	NHLF	lung
37	chr7:50504800-50513000	Weak transcription	Osteobl	bone
38	chr7:50504800-50513200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:50504800-50513200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr7:50504800-50513400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:50504800-50516000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:50504800-50516800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr7:50504800-50517400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr7:50505000-50511000	Weak transcription	NHDF-Ad	bronchial
45	chr7:50505000-50513000	Weak transcription	Left Ventricle	heart
46	chr7:50505000-50513400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:50505000-50513800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr7:50505400-50513400	Weak transcription	Colon Smooth Muscle	Colon
49	chr7:50505400-50517200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr7:50505400-50517200	Weak transcription	Placenta Amnion	Placenta Amnion

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