Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FIGNL1-2	chr7:50526140-50526541	NONHSAT120561

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11575551	0.83[AMR][1000 genomes]
rs11575557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11575565	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11575568	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11575570	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11575574	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11971146	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11971434	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11973116	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11973441	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11974930	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11974997	0.82[ASW][hapmap]
rs11975450	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11976368	0.88[AFR][1000 genomes]
rs11977135	0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11978010	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17133817	0.90[AFR][1000 genomes]
rs17133826	0.86[AFR][1000 genomes]
rs17133832	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17152012	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs36117815	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61742382	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1026081	chr7:50525900-50538184	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50518800-50535400	Weak transcription	Pancreas	Pancrea
2	chr7:50518800-50535600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:50518800-50535600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:50518800-50535600	Weak transcription	HepG2	liver
5	chr7:50519000-50529400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:50524800-50530000	Weak transcription	Liver	Liver
7	chr7:50525000-50526400	Strong transcription	Duodenum Mucosa	Duodenum
8	chr7:50525000-50526400	Strong transcription	Fetal Intestine Large	intestine
9	chr7:50525000-50527200	Strong transcription	Fetal Intestine Small	intestine

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