Variant report
| Variant | rs11988109 |
|---|---|
| Chromosome Location | chr8:51308730-51308731 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11984847 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11985543 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11988078 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11988505 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11988866 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11988979 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11990050 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11990082 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11990159 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11991343 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11993522 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11995178 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11996964 | 1.00[AMR][1000 genomes] |
| rs11997407 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56822119 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57722611 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58233516 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58747692 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59960463 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60273928 | 1.00[AMR][1000 genomes] |
| rs60478315 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61384064 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916392 | chr8:50827638-51395140 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv948436 | chr8:51115028-51917504 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv831312 | chr8:51239772-51422844 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:51300000-51319800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr8:51306400-51309000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
