Variant report

Variant	rs11990082
Chromosome Location	chr8:51310622-51310623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:49891255..49891972-chr8:51310445..51311051,2	MCF-7	breast:
2	chr8:50947077..50947745-chr8:51310573..51311162,2	MCF-7	breast:
3	chr8:50826287..50827033-chr8:51310198..51311230,3	MCF-7	breast:
4	chr8:50947214..50948091-chr8:51310516..51311364,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11984847	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11985543	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988078	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988109	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988505	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988866	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988979	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11989227	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs11990050	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11991343	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11995178	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996964	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11997407	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914775	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs56804531	0.85[AFR][1000 genomes]
rs56822119	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56890895	0.85[AFR][1000 genomes]
rs57722611	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58233516	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58747692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59960463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60273928	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60478315	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61384064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51300000-51319800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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