Variant report

Variant	rs56804531
Chromosome Location	chr8:51209839-51209840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10086701	1.00[AMR][1000 genomes]
rs10086711	1.00[AMR][1000 genomes]
rs10095854	1.00[AMR][1000 genomes]
rs10098968	1.00[AMR][1000 genomes]
rs10100178	1.00[AMR][1000 genomes]
rs10103196	1.00[AMR][1000 genomes]
rs10105597	1.00[AMR][1000 genomes]
rs10105663	1.00[AMR][1000 genomes]
rs10108552	1.00[AMR][1000 genomes]
rs10110083	1.00[AMR][1000 genomes]
rs10110244	1.00[AMR][1000 genomes]
rs10110791	1.00[AMR][1000 genomes]
rs11984847	0.82[AFR][1000 genomes]
rs11985543	0.85[AFR][1000 genomes]
rs11986830	1.00[AMR][1000 genomes]
rs11988078	0.82[AFR][1000 genomes]
rs11988505	0.96[AFR][1000 genomes]
rs11988866	0.82[AFR][1000 genomes]
rs11988979	0.82[AFR][1000 genomes]
rs11990050	0.85[AFR][1000 genomes]
rs11990082	0.85[AFR][1000 genomes]
rs11990159	0.85[AFR][1000 genomes]
rs11991343	0.93[AFR][1000 genomes]
rs11993522	0.85[AFR][1000 genomes]
rs11995178	0.96[AFR][1000 genomes]
rs11995916	1.00[AMR][1000 genomes]
rs11996964	0.90[AFR][1000 genomes]
rs11997407	0.85[AFR][1000 genomes]
rs12334688	1.00[AMR][1000 genomes]
rs16914314	1.00[AMR][1000 genomes]
rs16914324	1.00[AMR][1000 genomes]
rs16914325	1.00[AMR][1000 genomes]
rs16914366	1.00[AMR][1000 genomes]
rs16914373	1.00[AMR][1000 genomes]
rs16914384	1.00[AMR][1000 genomes]
rs16914386	1.00[AMR][1000 genomes]
rs16914392	1.00[AMR][1000 genomes]
rs16914395	1.00[AMR][1000 genomes]
rs16914462	1.00[AMR][1000 genomes]
rs28546668	1.00[AMR][1000 genomes]
rs28642790	1.00[AMR][1000 genomes]
rs28644781	1.00[AMR][1000 genomes]
rs28654110	1.00[AMR][1000 genomes]
rs28773838	1.00[AMR][1000 genomes]
rs56822119	0.82[AFR][1000 genomes]
rs56890895	1.00[AFR][1000 genomes]
rs57722611	0.96[AFR][1000 genomes]
rs58233516	0.96[AFR][1000 genomes]
rs58747692	0.85[AFR][1000 genomes]
rs59960463	0.85[AFR][1000 genomes]
rs60478315	0.82[AFR][1000 genomes]
rs61384064	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51209400-51220600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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