Variant report

Variant	rs56890895
Chromosome Location	chr8:51236478-51236479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11984847	0.82[AFR][1000 genomes]
rs11985543	0.85[AFR][1000 genomes]
rs11988078	0.82[AFR][1000 genomes]
rs11988505	0.96[AFR][1000 genomes]
rs11988866	0.82[AFR][1000 genomes]
rs11988979	0.82[AFR][1000 genomes]
rs11990050	0.85[AFR][1000 genomes]
rs11990082	0.85[AFR][1000 genomes]
rs11990159	0.85[AFR][1000 genomes]
rs11991343	0.93[AFR][1000 genomes]
rs11993522	0.85[AFR][1000 genomes]
rs11995178	0.96[AFR][1000 genomes]
rs11996964	0.90[AFR][1000 genomes]
rs11997407	0.85[AFR][1000 genomes]
rs56804531	1.00[AFR][1000 genomes]
rs56822119	0.82[AFR][1000 genomes]
rs57722611	0.96[AFR][1000 genomes]
rs58233516	0.96[AFR][1000 genomes]
rs58747692	0.85[AFR][1000 genomes]
rs59960463	0.85[AFR][1000 genomes]
rs60478315	0.82[AFR][1000 genomes]
rs61384064	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv6185	chr8:51213648-51237196	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1828291	chr8:51225111-51246823	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1832233	chr8:51225111-51256438	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1827302	chr8:51225496-51246823	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51236200-51236600	Active TSS	Fetal Heart	heart
2	chr8:51236400-51237800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links