Variant report

Variant	rs12001165
Chromosome Location	chr9:103119789-103119790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103118918..103120711-chr9:103139170..103141171,2	MCF-7	breast:
2	chr9:103118204..103120395-chr9:103125148..103126687,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11998846	1.00[AMR][1000 genomes]
rs11999065	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11999333	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11999405	1.00[AMR][1000 genomes]
rs11999759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11999920	1.00[AMR][1000 genomes]
rs12000423	1.00[AMR][1000 genomes]
rs12000833	1.00[AMR][1000 genomes]
rs12001197	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12001218	1.00[AMR][1000 genomes]
rs12001575	1.00[AMR][1000 genomes]
rs12003270	1.00[AMR][1000 genomes]
rs12003337	1.00[AMR][1000 genomes]
rs12003593	1.00[AMR][1000 genomes]
rs12004561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005084	1.00[AMR][1000 genomes]
rs12005328	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005758	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28704948	1.00[AMR][1000 genomes]
rs58290582	1.00[AMR][1000 genomes]
rs58604350	1.00[AMR][1000 genomes]
rs59127855	1.00[AMR][1000 genomes]
rs61163672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103115800-103119800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:103115800-103119800	Weak transcription	HUVEC	blood vessel
3	chr9:103116200-103119800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:103116200-103122400	Weak transcription	Fetal Heart	heart
5	chr9:103116200-103123400	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:103116200-103126000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:103116600-103120800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:103116600-103131000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:103116800-103120600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:103117200-103120000	Weak transcription	HepG2	liver
11	chr9:103117200-103125800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:103117400-103121000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:103117400-103128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:103117600-103122200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:103117800-103120000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr9:103118200-103119800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr9:103119200-103120400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:103119200-103120600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:103119200-103120600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr9:103119400-103120600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:103119600-103121000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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