Variant report

Variant	rs59127855
Chromosome Location	chr9:102970766-102970767
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102787308..102789261-chr9:102970002..102972475,2	K562	blood:
2	chr9:102963195..102965922-chr9:102967763..102971400,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11998846	1.00[AMR][1000 genomes]
rs11999065	1.00[AMR][1000 genomes]
rs11999333	1.00[AMR][1000 genomes]
rs11999405	1.00[AMR][1000 genomes]
rs11999759	1.00[AMR][1000 genomes]
rs11999920	1.00[AMR][1000 genomes]
rs12000423	1.00[AMR][1000 genomes]
rs12000833	1.00[AMR][1000 genomes]
rs12001165	1.00[AMR][1000 genomes]
rs12001197	1.00[AMR][1000 genomes]
rs12001218	1.00[AMR][1000 genomes]
rs12001575	1.00[AMR][1000 genomes]
rs12003270	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003337	1.00[AMR][1000 genomes]
rs12003593	1.00[AMR][1000 genomes]
rs12004561	1.00[AMR][1000 genomes]
rs12005084	1.00[AMR][1000 genomes]
rs12005328	1.00[AMR][1000 genomes]
rs12005758	1.00[AMR][1000 genomes]
rs28704948	1.00[AMR][1000 genomes]
rs58290582	1.00[AMR][1000 genomes]
rs58604350	1.00[AMR][1000 genomes]
rs61163672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv3366028	chr9:102947446-102973079	Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102940400-102978000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:102953000-102976800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:102953800-102977600	Weak transcription	Fetal Stomach	stomach
4	chr9:102954600-102972200	Weak transcription	Primary B cells from cord blood	blood
5	chr9:102954600-102978000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:102954800-102972000	Weak transcription	Left Ventricle	heart
7	chr9:102955000-102988400	Weak transcription	Dnd41	blood
8	chr9:102955200-102999600	Weak transcription	Lung	lung
9	chr9:102956000-102972000	Weak transcription	GM12878-XiMat	blood
10	chr9:102956200-102983400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:102957200-102973200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:102957400-102977800	Weak transcription	Aorta	Aorta
13	chr9:102958800-103014400	Weak transcription	Hela-S3	cervix
14	chr9:102959000-102984400	Weak transcription	HepG2	liver
15	chr9:102959800-102977600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:102959800-102977600	Weak transcription	Ovary	ovary
17	chr9:102959800-102994600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:102960800-102978000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:102961400-102972000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr9:102962000-102989200	Weak transcription	Fetal Lung	lung
21	chr9:102964800-102988400	Weak transcription	Fetal Intestine Large	intestine
22	chr9:102965400-102976400	Weak transcription	Fetal Heart	heart
23	chr9:102966600-102972000	Weak transcription	Primary T cells from cord blood	blood
24	chr9:102967600-102972200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:102967600-102975600	Weak transcription	HSMM	muscle
26	chr9:102967600-102977800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr9:102967600-102978400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:102967600-102988600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:102967800-102972000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr9:102969600-102972000	Weak transcription	HUVEC	blood vessel
31	chr9:102969800-102978600	Weak transcription	Right Ventricle	heart

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