Variant report

Variant	rs12001218
Chromosome Location	chr9:103128908-103128909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11998846	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11999065	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11999333	1.00[AMR][1000 genomes]
rs11999405	1.00[AMR][1000 genomes]
rs11999630	1.00[YRI][hapmap]
rs11999759	1.00[AMR][1000 genomes]
rs11999920	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12000423	1.00[AMR][1000 genomes]
rs12000833	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12001165	1.00[AMR][1000 genomes]
rs12001197	1.00[AMR][1000 genomes]
rs12001575	1.00[AMR][1000 genomes]
rs12002405	1.00[YRI][hapmap]
rs12003270	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12003337	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12003593	1.00[AMR][1000 genomes]
rs12004561	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12005084	1.00[AMR][1000 genomes]
rs12005328	1.00[AMR][1000 genomes]
rs12005758	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28704948	1.00[AMR][1000 genomes]
rs58290582	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58604350	1.00[AMR][1000 genomes]
rs59127855	1.00[AMR][1000 genomes]
rs61163672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103116600-103131000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:103125200-103135400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:103128400-103129000	Enhancers	K562	blood
4	chr9:103128800-103129600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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