Variant report
| Variant | rs58290582 |
|---|---|
| Chromosome Location | chr9:103168564-103168565 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:103166975..103169241-chr9:103188340..103190441,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000066697 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11998846 | 1.00[AMR][1000 genomes] |
| rs11999065 | 1.00[AMR][1000 genomes] |
| rs11999405 | 1.00[AMR][1000 genomes] |
| rs11999759 | 1.00[AMR][1000 genomes] |
| rs11999920 | 1.00[AMR][1000 genomes] |
| rs12000423 | 1.00[AMR][1000 genomes] |
| rs12000833 | 1.00[AMR][1000 genomes] |
| rs12001165 | 1.00[AMR][1000 genomes] |
| rs12001197 | 1.00[AMR][1000 genomes] |
| rs12001218 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12001575 | 1.00[AMR][1000 genomes] |
| rs12003270 | 1.00[AMR][1000 genomes] |
| rs12003337 | 1.00[AMR][1000 genomes] |
| rs12004561 | 1.00[AMR][1000 genomes] |
| rs12005084 | 1.00[AMR][1000 genomes] |
| rs12005328 | 1.00[AMR][1000 genomes] |
| rs12005758 | 1.00[AMR][1000 genomes] |
| rs28704948 | 1.00[AMR][1000 genomes] |
| rs58604350 | 1.00[AMR][1000 genomes] |
| rs59127855 | 1.00[AMR][1000 genomes] |
| rs61163672 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893623 | chr9:102648036-103405197 | Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv825012 | chr9:103152205-103256281 | Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
