Variant report

Variant	rs12002770
Chromosome Location	chr9:13666053-13666054
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10491759	1.00[EUR][1000 genomes]
rs11999187	1.00[EUR][1000 genomes]
rs11999635	1.00[EUR][1000 genomes]
rs11999667	1.00[EUR][1000 genomes]
rs12000014	1.00[EUR][1000 genomes]
rs12002470	1.00[EUR][1000 genomes]
rs12003464	1.00[EUR][1000 genomes]
rs12003833	1.00[EUR][1000 genomes]
rs12006391	1.00[EUR][1000 genomes]
rs13293078	1.00[EUR][1000 genomes]
rs16930617	1.00[EUR][1000 genomes]
rs16930619	1.00[EUR][1000 genomes]
rs16930622	1.00[EUR][1000 genomes]
rs16930658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2209264	1.00[EUR][1000 genomes]
rs35382008	1.00[EUR][1000 genomes]
rs59275116	1.00[EUR][1000 genomes]
rs7852464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7855342	1.00[EUR][1000 genomes]
rs7870669	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1843958	chr9:13631992-13706651	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13665400-13666200	Active TSS	A549	lung
2	chr9:13665600-13666200	Active TSS	Adipose Nuclei	Adipose
3	chr9:13665600-13666200	Enhancers	Placenta	Placenta
4	chr9:13665600-13666200	Active TSS	HepG2	liver
5	chr9:13665600-13666200	Active TSS	K562	blood
6	chr9:13665600-13666200	Active TSS	NHDF-Ad	bronchial
7	chr9:13665800-13666200	Active TSS	Hela-S3	cervix
8	chr9:13665800-13675800	Weak transcription	Left Ventricle	heart
9	chr9:13666000-13666200	Active TSS	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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