Variant report
| Variant | rs12003464 |
|---|---|
| Chromosome Location | chr9:13655087-13655088 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10491759 | 1.00[EUR][1000 genomes] |
| rs11999187 | 1.00[EUR][1000 genomes] |
| rs11999635 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11999667 | 1.00[EUR][1000 genomes] |
| rs12000014 | 1.00[EUR][1000 genomes] |
| rs12002470 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12002770 | 1.00[EUR][1000 genomes] |
| rs12003833 | 1.00[EUR][1000 genomes] |
| rs12006391 | 1.00[EUR][1000 genomes] |
| rs13293078 | 1.00[EUR][1000 genomes] |
| rs16930617 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16930619 | 1.00[EUR][1000 genomes] |
| rs16930622 | 1.00[EUR][1000 genomes] |
| rs16930658 | 1.00[EUR][1000 genomes] |
| rs2209264 | 1.00[EUR][1000 genomes] |
| rs35382008 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59275116 | 1.00[EUR][1000 genomes] |
| rs7852464 | 1.00[EUR][1000 genomes] |
| rs7855342 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7870669 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023684 | chr9:13529680-13744602 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv540067 | chr9:13529680-13744602 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv892587 | chr9:13601074-13732363 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv1843958 | chr9:13631992-13706651 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv2547786 | chr9:13655005-13656498 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13651600-13660800 | Weak transcription | Right Atrium | heart |
