Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10491759	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11999187	1.00[EUR][1000 genomes]
rs11999635	1.00[EUR][1000 genomes]
rs11999667	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12000014	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12002470	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12002770	1.00[EUR][1000 genomes]
rs12003464	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12003833	1.00[EUR][1000 genomes]
rs12006391	1.00[EUR][1000 genomes]
rs13293078	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16930617	1.00[EUR][1000 genomes]
rs16930619	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16930622	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16930658	1.00[EUR][1000 genomes]
rs2209264	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35382008	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59275116	1.00[EUR][1000 genomes]
rs7852464	1.00[EUR][1000 genomes]
rs7870669	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017792	chr9:13529680-13654107	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1843958	chr9:13631992-13706651	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13641800-13646800	Enhancers	Fetal Lung	lung
2	chr9:13643600-13648400	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:13645400-13647000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:13646000-13646800	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:13646200-13647000	Enhancers	NHEK	skin

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