Variant report

Variant	rs7870669
Chromosome Location	chr9:13685438-13685439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10491759	1.00[EUR][1000 genomes]
rs11999187	1.00[EUR][1000 genomes]
rs11999635	1.00[EUR][1000 genomes]
rs11999667	1.00[EUR][1000 genomes]
rs12000014	1.00[EUR][1000 genomes]
rs12002470	1.00[EUR][1000 genomes]
rs12002770	1.00[EUR][1000 genomes]
rs12003464	1.00[EUR][1000 genomes]
rs12003833	1.00[EUR][1000 genomes]
rs12006391	1.00[EUR][1000 genomes]
rs13293078	1.00[EUR][1000 genomes]
rs16930617	1.00[EUR][1000 genomes]
rs16930619	1.00[EUR][1000 genomes]
rs16930622	1.00[EUR][1000 genomes]
rs16930658	1.00[EUR][1000 genomes]
rs2209264	1.00[EUR][1000 genomes]
rs35382008	1.00[EUR][1000 genomes]
rs59275116	1.00[EUR][1000 genomes]
rs7026732	0.80[AFR][1000 genomes]
rs7852464	1.00[EUR][1000 genomes]
rs7855342	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1843958	chr9:13631992-13706651	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892588	chr9:13667639-13715063	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13683600-13686000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:13684800-13686000	Enhancers	Psoas Muscle	Psoas
3	chr9:13684800-13686200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr9:13685000-13685600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:13685000-13688000	Weak transcription	Fetal Heart	heart
6	chr9:13685200-13685800	Weak transcription	Left Ventricle	heart
7	chr9:13685200-13688600	Weak transcription	Aorta	Aorta
8	chr9:13685200-13688600	Weak transcription	Right Atrium	heart
9	chr9:13685200-13688600	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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