Variant report

Variant	rs12003027
Chromosome Location	chr9:21934442-21934443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10811639	1.00[ASN][1000 genomes]
rs10965184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12002708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003714	1.00[ASN][1000 genomes]
rs2188126	0.93[GIH][hapmap]
rs58869398	1.00[ASN][1000 genomes]
rs73429352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73434151	1.00[EUR][1000 genomes]
rs73440481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442448	1.00[ASN][1000 genomes]
rs73442453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442472	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442474	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855729	1.00[EUR][1000 genomes]
rs7868374	0.93[GIH][hapmap];1.00[ASN][1000 genomes]
rs7875199	0.93[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv892745	chr9:21857244-22006273	Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv1821117	chr9:21933029-22012229	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21911000-21935800	Weak transcription	HSMM	muscle
2	chr9:21920600-21935000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:21920600-21942600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:21921200-21935600	Weak transcription	Primary T cells from cord blood	blood
5	chr9:21923800-21934800	Weak transcription	Dnd41	blood
6	chr9:21924000-21934600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:21928000-21934800	Weak transcription	Psoas Muscle	Psoas
8	chr9:21929800-21935600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:21931400-21934600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:21931400-21937400	Weak transcription	Pancreas	Pancrea
11	chr9:21931600-21935600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:21931800-21935400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:21931800-21938000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr9:21932000-21934600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:21932000-21935800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:21932400-21935800	Weak transcription	Adipose Nuclei	Adipose
17	chr9:21932600-21939000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:21933200-21935400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr9:21933600-21936200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:21934000-21935400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:21934000-21935600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:21934200-21935400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:21934200-21935400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr9:21934400-21935400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:21934400-21935600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:21934400-21935600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:21934400-21935600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr9:21934400-21937800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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