Variant report

Variant	rs73434151
Chromosome Location	chr9:21768844-21768845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10965184	1.00[EUR][1000 genomes]
rs11998828	1.00[EUR][1000 genomes]
rs12002708	1.00[EUR][1000 genomes]
rs12003027	1.00[EUR][1000 genomes]
rs73429352	1.00[EUR][1000 genomes]
rs73440481	1.00[EUR][1000 genomes]
rs73440484	1.00[EUR][1000 genomes]
rs73442446	1.00[EUR][1000 genomes]
rs73442453	1.00[EUR][1000 genomes]
rs73442470	1.00[EUR][1000 genomes]
rs73442472	1.00[EUR][1000 genomes]
rs73442474	1.00[EUR][1000 genomes]
rs7855729	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892743	chr9:21675545-21772064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
4	nsv1016579	chr9:21756285-21785335	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21762600-21770200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:21765400-21770400	Weak transcription	NHLF	lung
3	chr9:21765400-21770600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:21765400-21770600	Weak transcription	NH-A	brain
5	chr9:21765400-21770600	Weak transcription	Osteobl	bone
6	chr9:21765400-21772600	Weak transcription	HSMM	muscle
7	chr9:21765600-21770200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:21765600-21770400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:21765600-21770600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:21765600-21770600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:21765600-21770600	Weak transcription	NHDF-Ad	bronchial
12	chr9:21765600-21770800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:21766600-21769200	Enhancers	Stomach Mucosa	stomach
14	chr9:21767200-21771000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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