Variant report

Variant	rs73429352
Chromosome Location	chr9:21817524-21817525
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:21815923..21817929-chr9:22242697..22244990,2	MCF-7	breast:
2	chr9:21800813..21805862-chr9:21815237..21818014,5	MCF-7	breast:
3	chr9:21815119..21818552-chr9:22084345..22087438,5	MCF-7	breast:
4	chr9:21814236..21815756-chr9:21816687..21818774,2	MCF-7	breast:
5	chr9:21811237..21820561-chr9:21988636..21997115,18	MCF-7	breast:
6	chr9:21811532..21820564-chr9:21988281..21997291,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240498	Chromatin interaction
ENSG00000099810	Chromatin interaction
ENSG00000147889	Chromatin interaction
ENSG00000266446	Chromatin interaction
ENSG00000264545	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10965184	1.00[EUR][1000 genomes]
rs11998828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12002708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12003027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73434151	1.00[EUR][1000 genomes]
rs73440481	1.00[EUR][1000 genomes]
rs73440484	1.00[EUR][1000 genomes]
rs73442446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73442453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73442470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73442472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73442474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7855729	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21804000-21817600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:21804000-21838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:21806000-21817600	Genic enhancers	HMEC	breast
4	chr9:21806400-21819800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:21806600-21841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:21809200-21836800	Weak transcription	Small Intestine	intestine
7	chr9:21814000-21831800	Weak transcription	Fetal Heart	heart
8	chr9:21814400-21817600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr9:21814400-21831800	Weak transcription	Stomach Mucosa	stomach
10	chr9:21814400-21837400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:21814400-21845200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:21814600-21817800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:21814600-21818600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:21814600-21819200	Strong transcription	Dnd41	blood
15	chr9:21814800-21819600	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:21814800-21819800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:21814800-21820000	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr9:21814800-21820000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:21814800-21820400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:21815000-21818600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:21815000-21819200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr9:21815000-21819200	Strong transcription	NHEK	skin
23	chr9:21815000-21819400	ZNF genes & repeats	A549	lung
24	chr9:21815000-21819400	Strong transcription	NH-A	brain
25	chr9:21815000-21819600	Strong transcription	Primary B cells from peripheral blood	blood
26	chr9:21815000-21819800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr9:21815200-21819600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:21815400-21818400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:21815400-21819200	Strong transcription	Hela-S3	cervix
30	chr9:21815400-21819400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr9:21815400-21819400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr9:21815600-21817600	Strong transcription	GM12878-XiMat	blood
33	chr9:21815600-21817800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:21815600-21818000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
35	chr9:21815600-21818000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:21815600-21818400	Strong transcription	Aorta	Aorta
37	chr9:21815600-21818800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:21815600-21819000	Strong transcription	Fetal Lung	lung
39	chr9:21815600-21819000	Strong transcription	HSMMtube	muscle
40	chr9:21815600-21819200	Strong transcription	Primary T cells from cord blood	blood
41	chr9:21815600-21819200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr9:21815600-21819200	Strong transcription	HepG2	liver
43	chr9:21815600-21819400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr9:21815600-21819400	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr9:21815600-21819400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr9:21815600-21819400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr9:21815600-21819400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr9:21815600-21819400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:21815600-21819400	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr9:21815600-21819400	Strong transcription	Placenta	Placenta

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