Variant report

Variant	rs73440481
Chromosome Location	chr9:21921016-21921017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10811639	1.00[ASN][1000 genomes]
rs10965184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998828	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12002708	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003027	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003714	1.00[ASN][1000 genomes]
rs58869398	1.00[ASN][1000 genomes]
rs73429352	1.00[EUR][1000 genomes]
rs73434151	1.00[EUR][1000 genomes]
rs73440484	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442446	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442448	1.00[ASN][1000 genomes]
rs73442453	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855729	1.00[EUR][1000 genomes]
rs7868374	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv892745	chr9:21857244-22006273	Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21905400-21931000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:21911000-21931200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:21911000-21935800	Weak transcription	HSMM	muscle
4	chr9:21916600-21930800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:21918800-21921200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr9:21918800-21921200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr9:21919000-21921200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:21919600-21921200	Enhancers	Primary T cells from cord blood	blood
9	chr9:21919800-21931000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:21919800-21931000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:21919800-21932800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:21920000-21922000	Weak transcription	Aorta	Aorta
13	chr9:21920000-21931200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:21920200-21930400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:21920200-21931000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:21920400-21928400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:21920400-21931400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:21920400-21931600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:21920600-21921200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:21920600-21921800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:21920600-21923400	Weak transcription	Thymus	Thymus
22	chr9:21920600-21935000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:21920600-21942600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:21920800-21924000	Enhancers	Hela-S3	cervix
25	chr9:21920800-21932000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:21921000-21922000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr9:21921000-21923800	Enhancers	Dnd41	blood

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