Variant report

Variant	rs12003723
Chromosome Location	chr9:72616786-72616787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs12000536	1.00[EUR][1000 genomes]
rs12004033	1.00[EUR][1000 genomes]
rs12004037	1.00[EUR][1000 genomes]
rs12005031	1.00[EUR][1000 genomes]
rs17086970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17088359	1.00[EUR][1000 genomes]
rs1927111	1.00[EUR][1000 genomes]
rs2975869	1.00[EUR][1000 genomes]
rs2975870	1.00[EUR][1000 genomes]
rs2975871	1.00[EUR][1000 genomes]
rs2975872	1.00[EUR][1000 genomes]
rs2975873	1.00[EUR][1000 genomes]
rs2975874	1.00[EUR][1000 genomes]
rs2975875	1.00[EUR][1000 genomes]
rs2975876	1.00[EUR][1000 genomes]
rs2975878	1.00[EUR][1000 genomes]
rs2975881	1.00[EUR][1000 genomes]
rs2975882	1.00[EUR][1000 genomes]
rs2975883	1.00[EUR][1000 genomes]
rs2975885	1.00[EUR][1000 genomes]
rs2975886	1.00[EUR][1000 genomes]
rs2975887	1.00[EUR][1000 genomes]
rs2997667	1.00[EUR][1000 genomes]
rs2997683	1.00[EUR][1000 genomes]
rs2997688	1.00[EUR][1000 genomes]
rs2997689	1.00[EUR][1000 genomes]
rs2997691	1.00[EUR][1000 genomes]
rs2997692	1.00[EUR][1000 genomes]
rs2997694	1.00[EUR][1000 genomes]
rs2997695	1.00[EUR][1000 genomes]
rs2997698	1.00[EUR][1000 genomes]
rs2997699	1.00[EUR][1000 genomes]
rs2997700	1.00[EUR][1000 genomes]
rs2997701	1.00[EUR][1000 genomes]
rs2997702	1.00[EUR][1000 genomes]
rs2997703	1.00[EUR][1000 genomes]
rs2997704	1.00[EUR][1000 genomes]
rs2997705	1.00[EUR][1000 genomes]
rs3015190	1.00[EUR][1000 genomes]
rs3015191	1.00[EUR][1000 genomes]
rs3015193	1.00[EUR][1000 genomes]
rs3015194	1.00[EUR][1000 genomes]
rs3015195	1.00[EUR][1000 genomes]
rs3015196	1.00[EUR][1000 genomes]
rs3015197	1.00[EUR][1000 genomes]
rs3015199	1.00[EUR][1000 genomes]
rs3015201	1.00[EUR][1000 genomes]
rs3015202	1.00[EUR][1000 genomes]
rs3015203	1.00[EUR][1000 genomes]
rs3015205	1.00[EUR][1000 genomes]
rs3015206	1.00[EUR][1000 genomes]
rs3015208	1.00[EUR][1000 genomes]
rs3015209	1.00[EUR][1000 genomes]
rs3015210	1.00[EUR][1000 genomes]
rs3015212	1.00[EUR][1000 genomes]
rs3015214	1.00[EUR][1000 genomes]
rs3015215	1.00[EUR][1000 genomes]
rs3015222	1.00[EUR][1000 genomes]
rs58773163	1.00[EUR][1000 genomes]
rs60579183	1.00[AMR][1000 genomes]
rs60836347	1.00[EUR][1000 genomes]
rs7043693	1.00[AMR][1000 genomes]
rs73449454	1.00[EUR][1000 genomes]
rs73449465	1.00[EUR][1000 genomes]
rs73458494	1.00[EUR][1000 genomes]
rs73460527	1.00[EUR][1000 genomes]
rs73460530	1.00[EUR][1000 genomes]
rs73650530	1.00[EUR][1000 genomes]
rs737556	1.00[AMR][1000 genomes]
rs7467303	1.00[AMR][1000 genomes]
rs7862220	1.00[EUR][1000 genomes]
rs7862668	1.00[AMR][1000 genomes]
rs9969714	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72612400-72619200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:72612400-72622600	Weak transcription	NHEK	skin
3	chr9:72612800-72620800	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:72613400-72618600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:72614600-72618600	Weak transcription	HSMMtube	muscle
6	chr9:72614800-72618800	Weak transcription	Fetal Lung	lung

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