Variant report

Variant	rs7862220
Chromosome Location	chr9:72675061-72675062
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1180089	0.84[GIH][hapmap]
rs12000536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12003723	1.00[EUR][1000 genomes]
rs12004033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12004037	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12005031	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17086970	1.00[EUR][1000 genomes]
rs17088359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1927111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2309645	0.84[GIH][hapmap]
rs2975869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2975887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997667	1.00[EUR][1000 genomes]
rs2997683	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2997688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2997706	1.00[AMR][1000 genomes]
rs3015190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015215	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3015222	1.00[EUR][1000 genomes]
rs58773163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60836347	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73449454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73449465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73458494	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73460527	1.00[EUR][1000 genomes]
rs73460530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73650530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs943535	0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72667600-72688400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:72668800-72675800	Enhancers	Rectal Smooth Muscle	rectum
3	chr9:72668800-72676600	Weak transcription	Gastric	stomach
4	chr9:72668800-72681400	Weak transcription	Esophagus	oesophagus
5	chr9:72669200-72682600	Weak transcription	Osteobl	bone
6	chr9:72670000-72688400	Weak transcription	NH-A	brain
7	chr9:72670200-72675200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:72670600-72676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:72671000-72675600	Enhancers	Stomach Smooth Muscle	stomach
10	chr9:72671200-72676000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:72671600-72675600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:72672000-72675600	Weak transcription	HSMM	muscle
13	chr9:72672000-72676000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:72672200-72675200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:72672400-72675800	Weak transcription	Spleen	Spleen
16	chr9:72672400-72680200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:72672400-72681400	Weak transcription	Ovary	ovary
18	chr9:72672600-72676600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:72673000-72675800	Enhancers	Colon Smooth Muscle	Colon
20	chr9:72674000-72680600	Weak transcription	Adipose Nuclei	Adipose
21	chr9:72674000-72682800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:72674000-72684400	Weak transcription	Fetal Stomach	stomach
23	chr9:72674200-72676800	Weak transcription	Right Atrium	heart
24	chr9:72674200-72679400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:72674400-72676000	Enhancers	HMEC	breast
26	chr9:72674600-72675600	Enhancers	NHEK	skin
27	chr9:72674600-72675800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:72674600-72677600	Genic enhancers	HSMMtube	muscle
29	chr9:72674800-72675800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:72674800-72676600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr9:72674800-72676600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr9:72675000-72676400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr9:72675000-72676800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:72675000-72677600	Enhancers	NHDF-Ad	bronchial
35	chr9:72675000-72680600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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