Variant report

Variant	rs60836347
Chromosome Location	chr9:72685403-72685404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30582912..30585021-chr9:72685079..72686915,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222894	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs12000536	1.00[EUR][1000 genomes]
rs12003723	1.00[EUR][1000 genomes]
rs12004033	1.00[EUR][1000 genomes]
rs12004037	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12005031	1.00[EUR][1000 genomes]
rs17086970	1.00[EUR][1000 genomes]
rs17088359	1.00[EUR][1000 genomes]
rs1927111	1.00[EUR][1000 genomes]
rs2975869	1.00[EUR][1000 genomes]
rs2975870	1.00[EUR][1000 genomes]
rs2975871	1.00[EUR][1000 genomes]
rs2975872	1.00[EUR][1000 genomes]
rs2975873	1.00[EUR][1000 genomes]
rs2975874	1.00[EUR][1000 genomes]
rs2975875	1.00[EUR][1000 genomes]
rs2975876	1.00[EUR][1000 genomes]
rs2975878	1.00[EUR][1000 genomes]
rs2975881	1.00[EUR][1000 genomes]
rs2975882	1.00[EUR][1000 genomes]
rs2975883	1.00[EUR][1000 genomes]
rs2975885	1.00[EUR][1000 genomes]
rs2975886	1.00[EUR][1000 genomes]
rs2975887	1.00[EUR][1000 genomes]
rs2997667	1.00[EUR][1000 genomes]
rs2997683	1.00[EUR][1000 genomes]
rs2997688	1.00[EUR][1000 genomes]
rs2997689	1.00[EUR][1000 genomes]
rs2997691	1.00[EUR][1000 genomes]
rs2997692	1.00[EUR][1000 genomes]
rs2997694	1.00[EUR][1000 genomes]
rs2997695	1.00[EUR][1000 genomes]
rs2997698	1.00[EUR][1000 genomes]
rs2997699	1.00[EUR][1000 genomes]
rs2997700	1.00[EUR][1000 genomes]
rs2997701	1.00[EUR][1000 genomes]
rs2997702	1.00[EUR][1000 genomes]
rs2997703	1.00[EUR][1000 genomes]
rs2997704	1.00[EUR][1000 genomes]
rs2997705	1.00[EUR][1000 genomes]
rs3015190	1.00[EUR][1000 genomes]
rs3015191	1.00[EUR][1000 genomes]
rs3015193	1.00[EUR][1000 genomes]
rs3015194	1.00[EUR][1000 genomes]
rs3015195	1.00[EUR][1000 genomes]
rs3015196	1.00[EUR][1000 genomes]
rs3015197	1.00[EUR][1000 genomes]
rs3015199	1.00[EUR][1000 genomes]
rs3015201	1.00[EUR][1000 genomes]
rs3015202	1.00[EUR][1000 genomes]
rs3015203	1.00[EUR][1000 genomes]
rs3015205	1.00[EUR][1000 genomes]
rs3015206	1.00[EUR][1000 genomes]
rs3015208	1.00[EUR][1000 genomes]
rs3015209	1.00[EUR][1000 genomes]
rs3015210	1.00[EUR][1000 genomes]
rs3015212	1.00[EUR][1000 genomes]
rs3015214	1.00[EUR][1000 genomes]
rs3015215	1.00[EUR][1000 genomes]
rs3015222	1.00[EUR][1000 genomes]
rs58773163	1.00[EUR][1000 genomes]
rs73449454	1.00[EUR][1000 genomes]
rs73449465	1.00[EUR][1000 genomes]
rs73458494	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73460527	1.00[EUR][1000 genomes]
rs73460530	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73650530	1.00[EUR][1000 genomes]
rs7862220	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72667600-72688400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:72670000-72688400	Weak transcription	NH-A	brain
3	chr9:72676600-72694000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:72676800-72688200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:72676800-72688400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:72677000-72689000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:72677600-72694000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:72680000-72689200	Enhancers	Colon Smooth Muscle	Colon
9	chr9:72681000-72687600	Enhancers	Rectal Smooth Muscle	rectum
10	chr9:72683400-72686600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:72683400-72688000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:72683400-72688200	Weak transcription	Osteobl	bone
13	chr9:72684800-72685800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:72684800-72694000	Weak transcription	Adipose Nuclei	Adipose
15	chr9:72685000-72687400	Weak transcription	HSMM	muscle
16	chr9:72685000-72694600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:72685200-72685800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:72685200-72687200	Weak transcription	HSMMtube	muscle
19	chr9:72685200-72688600	Weak transcription	Ovary	ovary
20	chr9:72685200-72689000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:72685200-72689200	Weak transcription	Fetal Stomach	stomach
22	chr9:72685200-72692200	Weak transcription	Small Intestine	intestine
23	chr9:72685200-72695800	Weak transcription	Aorta	Aorta
24	chr9:72685200-72696000	Weak transcription	Right Atrium	heart
25	chr9:72685400-72685800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:72685400-72688400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:72685400-72690400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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