Variant report

Variant	rs12003781
Chromosome Location	chr9:117600520-117600521
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12005693	1.00[AMR][1000 genomes]
rs56811460	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57659304	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58869092	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59181262	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59293522	1.00[AMR][1000 genomes]
rs60821311	1.00[AMR][1000 genomes]
rs6478110	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034962	1.00[AMR][1000 genomes]
rs7040185	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043852	1.00[AMR][1000 genomes]
rs7048156	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048361	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048850	0.81[AFR][1000 genomes]
rs7855924	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117598800-117602000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:117598800-117602000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:117599400-117600800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:117600000-117600600	Enhancers	NHDF-Ad	bronchial
5	chr9:117600000-117600800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:117600200-117600600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:117600200-117600800	Enhancers	HSMM	muscle
8	chr9:117600400-117601600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links