Variant report

Variant	rs57659304
Chromosome Location	chr9:117615712-117615713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117615331..117617300-chr9:117620476..117622767,2	MCF-7	breast:
2	chr9:117611299..117613789-chr9:117615464..117617211,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12003781	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005693	1.00[AMR][1000 genomes]
rs56811460	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58869092	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59181262	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59293522	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60821311	1.00[AMR][1000 genomes]
rs6478110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034962	1.00[AMR][1000 genomes]
rs7040185	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043852	1.00[AMR][1000 genomes]
rs7048156	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048361	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048850	0.82[AFR][1000 genomes]
rs7855924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117611600-117618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:117611800-117615800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:117613000-117616600	Enhancers	Stomach Mucosa	stomach
4	chr9:117613200-117615800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:117613400-117617000	Enhancers	Fetal Intestine Large	intestine
6	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:117613600-117616800	Weak transcription	HUVEC	blood vessel
8	chr9:117614000-117615800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:117614000-117616800	Weak transcription	Gastric	stomach
10	chr9:117614200-117616600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr9:117614200-117617000	Enhancers	Duodenum Mucosa	Duodenum
12	chr9:117614200-117617400	Enhancers	Fetal Intestine Small	intestine
13	chr9:117614400-117617000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr9:117614400-117617800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:117614400-117618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:117614600-117617400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:117614600-117617800	Weak transcription	HSMM	muscle
18	chr9:117614600-117618600	Weak transcription	HSMMtube	muscle
19	chr9:117614600-117618800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:117614800-117617800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:117615000-117617600	Weak transcription	NHDF-Ad	bronchial
22	chr9:117615000-117618800	Weak transcription	Fetal Stomach	stomach
23	chr9:117615400-117615800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr9:117615600-117616800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:117615600-117616800	Weak transcription	Small Intestine	intestine
26	chr9:117615600-117617400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:117615600-117617400	Weak transcription	Adipose Nuclei	Adipose
28	chr9:117615600-117617400	Weak transcription	Osteobl	bone
29	chr9:117615600-117617600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:117615600-117617800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:117615600-117617800	Weak transcription	NHLF	lung

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