Variant report

Variant	rs58869092
Chromosome Location	chr9:117599481-117599482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12003781	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005693	1.00[AMR][1000 genomes]
rs56811460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57659304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58465087	0.82[AFR][1000 genomes]
rs59181262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59293522	1.00[AMR][1000 genomes]
rs60821311	1.00[AMR][1000 genomes]
rs6478110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034962	1.00[AMR][1000 genomes]
rs7040185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043852	1.00[AMR][1000 genomes]
rs7048156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048850	0.87[AFR][1000 genomes]
rs7855924	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117593000-117600000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:117593000-117600200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:117598800-117602000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:117598800-117602000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:117599000-117600200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:117599200-117599800	Enhancers	HSMM	muscle
7	chr9:117599200-117600400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:117599400-117600800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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