Variant report

Variant	rs56811460
Chromosome Location	chr9:117606679-117606680
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12003781	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005693	1.00[AMR][1000 genomes]
rs57659304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58465087	0.82[AFR][1000 genomes]
rs58869092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59181262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59293522	1.00[AMR][1000 genomes]
rs60821311	1.00[AMR][1000 genomes]
rs6478110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034962	1.00[AMR][1000 genomes]
rs7040185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043852	1.00[AMR][1000 genomes]
rs7048156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048850	0.87[AFR][1000 genomes]
rs7855924	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117602200-117615400	Weak transcription	Pancreas	Pancrea
2	chr9:117606200-117607800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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