Variant report

Variant	rs12005092
Chromosome Location	chr9:110496021-110496022
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10979028	1.00[AMR][1000 genomes]
rs56014329	1.00[ASN][1000 genomes]
rs57325103	1.00[ASN][1000 genomes]
rs61091238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653650	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110494200-110497400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:110494200-110499200	Enhancers	Placenta	Placenta
3	chr9:110494400-110497400	Enhancers	Fetal Brain Female	brain
4	chr9:110494600-110496400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:110494800-110496200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:110494800-110497400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:110494800-110497400	Enhancers	Fetal Brain Male	brain
8	chr9:110494800-110497800	Enhancers	Fetal Stomach	stomach
9	chr9:110495000-110496200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:110495000-110496200	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr9:110495000-110496200	Flanking Active TSS	Brain Cingulate Gyrus	brain
12	chr9:110495000-110496200	Enhancers	Brain Germinal Matrix	brain
13	chr9:110495000-110496200	Enhancers	Left Ventricle	heart
14	chr9:110495000-110496200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr9:110495000-110496200	Enhancers	Small Intestine	intestine
16	chr9:110495000-110496200	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr9:110495000-110496200	Flanking Active TSS	Osteobl	bone
18	chr9:110495000-110496800	Enhancers	Colonic Mucosa	Colon
19	chr9:110495000-110497200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr9:110495000-110497400	Enhancers	Esophagus	oesophagus
21	chr9:110495000-110497400	Enhancers	Psoas Muscle	Psoas
22	chr9:110495200-110496200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:110495200-110496200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr9:110495200-110496200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:110495200-110496200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:110495200-110496200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:110495200-110496200	Flanking Active TSS	Liver	Liver
28	chr9:110495200-110496200	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr9:110495200-110496200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr9:110495200-110496200	Flanking Active TSS	Hela-S3	cervix
31	chr9:110495200-110496200	Flanking Active TSS	HSMM	muscle
32	chr9:110495200-110496200	Flanking Active TSS	NHDF-Ad	bronchial
33	chr9:110495200-110496200	Flanking Active TSS	NHLF	lung
34	chr9:110495200-110497400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:110495200-110498800	Weak transcription	Lung	lung
36	chr9:110495200-110501800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr9:110495400-110496200	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr9:110495400-110496200	Flanking Active TSS	HSMMtube	muscle
39	chr9:110495600-110496200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:110495600-110496200	Flanking Active TSS	Brain Substantia Nigra	brain
41	chr9:110495600-110496600	Weak transcription	Right Ventricle	heart
42	chr9:110495800-110496200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:110495800-110496200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
44	chr9:110495800-110496400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:110495800-110504200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr9:110496000-110496200	Enhancers	Brain Angular Gyrus	brain
47	chr9:110496000-110496200	Enhancers	Brain Anterior Caudate	brain
48	chr9:110496000-110496200	Enhancers	Brain Hippocampus Middle	brain
49	chr9:110496000-110496200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr9:110496000-110496200	Flanking Active TSS	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links