Variant report

Variant	rs73653652
Chromosome Location	chr9:110495241-110495242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110493820..110495597-chr9:110496777..110499007,2	MCF-7	breast:
2	chr9:110251222..110252874-chr9:110493739..110495674,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12005092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56014329	1.00[ASN][1000 genomes]
rs57325103	1.00[ASN][1000 genomes]
rs61091238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653650	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110486800-110495400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:110492200-110495600	Enhancers	Fetal Muscle Leg	muscle
3	chr9:110492800-110496000	Enhancers	Fetal Muscle Trunk	muscle
4	chr9:110493800-110495400	Enhancers	Right Atrium	heart
5	chr9:110494200-110495400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:110494200-110495600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:110494200-110497400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:110494200-110499200	Enhancers	Placenta	Placenta
9	chr9:110494400-110495400	Enhancers	Fetal Lung	lung
10	chr9:110494400-110497400	Enhancers	Fetal Brain Female	brain
11	chr9:110494600-110495400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:110494600-110496400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:110494800-110495400	Enhancers	Stomach Mucosa	stomach
14	chr9:110494800-110495400	Enhancers	HSMMtube	muscle
15	chr9:110494800-110495400	Enhancers	HUVEC	blood vessel
16	chr9:110494800-110495400	Enhancers	NHEK	skin
17	chr9:110494800-110496200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:110494800-110497400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:110494800-110497400	Enhancers	Fetal Brain Male	brain
20	chr9:110494800-110497800	Enhancers	Fetal Stomach	stomach
21	chr9:110495000-110495400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:110495000-110495400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr9:110495000-110495400	Enhancers	Duodenum Mucosa	Duodenum
24	chr9:110495000-110495400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr9:110495000-110495400	Enhancers	HMEC	breast
26	chr9:110495000-110495600	Enhancers	Fetal Heart	heart
27	chr9:110495000-110495600	Enhancers	NH-A	brain
28	chr9:110495000-110496000	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr9:110495000-110496000	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr9:110495000-110496200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:110495000-110496200	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr9:110495000-110496200	Flanking Active TSS	Brain Cingulate Gyrus	brain
33	chr9:110495000-110496200	Enhancers	Brain Germinal Matrix	brain
34	chr9:110495000-110496200	Enhancers	Left Ventricle	heart
35	chr9:110495000-110496200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr9:110495000-110496200	Enhancers	Small Intestine	intestine
37	chr9:110495000-110496200	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr9:110495000-110496200	Flanking Active TSS	Osteobl	bone
39	chr9:110495000-110496800	Enhancers	Colonic Mucosa	Colon
40	chr9:110495000-110497200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr9:110495000-110497400	Enhancers	Esophagus	oesophagus
42	chr9:110495000-110497400	Enhancers	Psoas Muscle	Psoas
43	chr9:110495200-110495400	Flanking Active TSS	Aorta	Aorta
44	chr9:110495200-110495400	Flanking Active TSS	Brain Angular Gyrus	brain
45	chr9:110495200-110495400	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr9:110495200-110495400	Flanking Active TSS	Ovary	ovary
47	chr9:110495200-110495400	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr9:110495200-110495600	Active TSS	Brain Substantia Nigra	brain
49	chr9:110495200-110495600	Enhancers	Gastric	stomach
50	chr9:110495200-110495800	Weak transcription	Pancreas	Pancrea

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