Variant report

Variant	rs73653650
Chromosome Location	chr9:110489527-110489528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12005092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56014329	1.00[ASN][1000 genomes]
rs57325103	1.00[ASN][1000 genomes]
rs61091238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653649	0.97[AFR][1000 genomes]
rs73653651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110482800-110495000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:110484400-110489600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:110486800-110495400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:110489200-110489600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:110489200-110490000	Enhancers	NHLF	lung
6	chr9:110489200-110490200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:110489400-110489800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chr9:110489400-110489800	Flanking Active TSS	Osteobl	bone
9	chr9:110489400-110490200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:110489400-110490200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:110489400-110490200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:110489400-110490400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:110489400-110490400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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