Variant report

Variant	rs12006688
Chromosome Location	chrX:55011457-55011458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12006936	0.81[ASW][hapmap];0.93[YRI][hapmap]
rs12007444	0.93[YRI][hapmap]
rs12009010	0.81[ASW][hapmap];0.93[YRI][hapmap]
rs12009826	1.00[ASW][hapmap];0.95[LWK][hapmap];0.92[YRI][hapmap]
rs12009992	1.00[ASW][hapmap];0.95[LWK][hapmap];0.93[YRI][hapmap]
rs35995915	0.81[ASW][hapmap];0.93[YRI][hapmap]
rs6612249	0.93[YRI][hapmap]
rs7050286	0.81[ASW][hapmap];1.00[YRI][hapmap]
rs7054008	1.00[ASW][hapmap];0.95[LWK][hapmap];0.93[YRI][hapmap]
rs7055550	1.00[ASW][hapmap];0.95[LWK][hapmap];0.93[YRI][hapmap]
rs7876830	0.86[LWK][hapmap];0.93[YRI][hapmap]
rs7877193	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs7884892	1.00[ASW][hapmap];0.95[LWK][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6912	chrX:54980516-55025317	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55004600-55023800	Weak transcription	Psoas Muscle	Psoas
2	chrX:55010200-55011600	Strong transcription	Liver	Liver
3	chrX:55011400-55018600	Weak transcription	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links