Variant report

No.	Distal block	Cell Line	Cell type
1	chrX:55004697..55006668-chrX:55034561..55037908,3	MCF-7	breast:
2	chrX:54665615..54668017-chrX:55003865..55006750,2	MCF-7	breast:
3	chrX:55003054..55006721-chrX:55025956..55029566,3	MCF-7	breast:
4	chrX:55003603..55005619-chrX:55024382..55028230,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158571	Chromatin interaction
ENSG00000169188	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12006688	1.00[ASW][hapmap];0.95[LWK][hapmap];0.92[YRI][hapmap]
rs12006936	0.81[ASW][hapmap];1.00[YRI][hapmap]
rs12007444	1.00[YRI][hapmap]
rs12009010	0.81[ASW][hapmap];1.00[YRI][hapmap]
rs12009992	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12011419	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12013180	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs35995915	0.81[ASW][hapmap];1.00[YRI][hapmap]
rs6521790	1.00[TSI][hapmap]
rs6612176	1.00[TSI][hapmap]
rs6612249	1.00[YRI][hapmap]
rs6612250	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6612254	1.00[TSI][hapmap]
rs7050286	0.81[ASW][hapmap];1.00[YRI][hapmap]
rs7054008	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7055550	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs742049	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7876830	0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7876887	1.00[TSI][hapmap]
rs7877193	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs7881427	1.00[TSI][hapmap]
rs7884892	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7889977	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9698941	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6912	chrX:54980516-55025317	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55003600-55005600	Enhancers	Liver	Liver
2	chrX:55004600-55023800	Weak transcription	Psoas Muscle	Psoas
3	chrX:55005400-55008000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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