Variant report

Variant	rs12006936
Chromosome Location	chrX:54990749-54990750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12006688	0.81[ASW][hapmap];0.93[YRI][hapmap]
rs12007444	1.00[YRI][hapmap]
rs12009010	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs12009826	0.81[ASW][hapmap];1.00[YRI][hapmap]
rs12009992	0.81[ASW][hapmap];1.00[YRI][hapmap]
rs1845444	1.00[MEX][hapmap]
rs35995915	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs6612249	1.00[YRI][hapmap]
rs7050286	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs7054008	0.81[ASW][hapmap];1.00[YRI][hapmap]
rs7055356	1.00[MEX][hapmap]
rs7055550	0.81[ASW][hapmap];1.00[YRI][hapmap]
rs727468	1.00[MEX][hapmap]
rs7876830	1.00[YRI][hapmap]
rs7877193	0.81[ASW][hapmap];0.93[YRI][hapmap]
rs7884892	0.81[ASW][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6912	chrX:54980516-55025317	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:54985800-54995400	Weak transcription	Liver	Liver
2	chrX:54986800-54996800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chrX:54989600-54991400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chrX:54989800-54993600	Enhancers	Primary T cells from cord blood	blood
5	chrX:54990200-54991200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chrX:54990200-54993200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chrX:54990400-54991400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chrX:54990400-54991600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chrX:54990600-54990800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chrX:54990600-54991800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chrX:54990600-54992000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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