Variant report

Variant	rs6612249
Chromosome Location	chrX:55002824-55002825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12006688	0.93[YRI][hapmap]
rs12006936	1.00[YRI][hapmap]
rs12007444	1.00[YRI][hapmap]
rs12009010	1.00[YRI][hapmap]
rs12009826	1.00[YRI][hapmap]
rs12009992	1.00[YRI][hapmap]
rs35995915	1.00[YRI][hapmap]
rs7050286	1.00[YRI][hapmap]
rs7054008	1.00[YRI][hapmap]
rs7055550	1.00[YRI][hapmap]
rs7876830	1.00[YRI][hapmap]
rs7877193	0.93[YRI][hapmap]
rs7884892	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6912	chrX:54980516-55025317	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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