Variant report

Variant	rs12021515
Chromosome Location	chr1:47873083-47873084
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11211529	1.00[EUR][1000 genomes]
rs11211536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12026379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12030146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12032801	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12049163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12049416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1680019	1.00[EUR][1000 genomes]
rs17103177	1.00[EUR][1000 genomes]
rs17103179	1.00[EUR][1000 genomes]
rs17103196	1.00[EUR][1000 genomes]
rs1765156	1.00[EUR][1000 genomes]
rs1813427	1.00[EUR][1000 genomes]
rs2253511	1.00[EUR][1000 genomes]
rs2506984	1.00[EUR][1000 genomes]
rs2622906	1.00[EUR][1000 genomes]
rs2622911	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3738317	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4926868	1.00[EUR][1000 genomes]
rs495482	1.00[EUR][1000 genomes]
rs506329	1.00[EUR][1000 genomes]
rs522768	1.00[EUR][1000 genomes]
rs527430	1.00[EUR][1000 genomes]
rs557101	1.00[EUR][1000 genomes]
rs60042036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs642750	1.00[EUR][1000 genomes]
rs6683513	0.87[EUR][1000 genomes]
rs6688278	0.87[EUR][1000 genomes]
rs66904716	1.00[EUR][1000 genomes]
rs6703935	1.00[EUR][1000 genomes]
rs693036	1.00[EUR][1000 genomes]
rs72480616	1.00[EUR][1000 genomes]
rs72553947	1.00[EUR][1000 genomes]
rs72553949	1.00[EUR][1000 genomes]
rs72637985	0.87[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47868800-47873800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:47871800-47873200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:47871800-47875000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:47871800-47875200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:47872000-47874800	Weak transcription	Fetal Kidney	kidney
6	chr1:47872200-47874800	Weak transcription	NHDF-Ad	bronchial
7	chr1:47872400-47877800	Enhancers	Osteobl	bone
8	chr1:47872600-47873400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:47872600-47875000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:47872800-47875200	Enhancers	HSMM	muscle
11	chr1:47872800-47877800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:47873000-47873600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:47873000-47874800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:47873000-47876600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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