The 2.0 version of rSNPBase

Variant report

Variant rs72553947
Chromosome Location chr1:47838652-47838653
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47800600-47854600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:47801000-47850800 Weak transcription NHEK skin
3 chr1:47801200-47839000 Weak transcription Right Ventricle heart
4 chr1:47814800-47850600 Weak transcription Aorta Aorta
5 chr1:47823000-47846400 Weak transcription Colonic Mucosa Colon
6 chr1:47824000-47851000 Weak transcription Stomach Mucosa stomach
7 chr1:47824000-47853800 Weak transcription Psoas Muscle Psoas
8 chr1:47827800-47854800 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:47831000-47840000 Weak transcription iPS-20b Cell Line embryonic stem cell
10 chr1:47832200-47854200 Weak transcription Esophagus oesophagus
11 chr1:47832800-47839200 Weak transcription Brain Hippocampus Middle brain
12 chr1:47833000-47840600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr1:47833200-47852000 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:47833400-47844600 Weak transcription iPS-15b Cell Line embryonic stem cell
15 chr1:47833600-47854200 Weak transcription H9 Cell Line embryonic stem cell
16 chr1:47833600-47854200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr1:47833800-47842800 Strong transcription Primary B cells from peripheral blood blood
18 chr1:47834000-47840400 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr1:47834000-47847400 Strong transcription Primary T helper cells fromperipheralblood blood
20 chr1:47834000-47847600 Strong transcription Primary T regulatory cells fromperipheralblood blood
21 chr1:47834000-47847600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr1:47834000-47849200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:47834000-47849200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:47834000-47849200 Strong transcription Dnd41 blood
25 chr1:47834000-47849400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:47834200-47839400 Strong transcription Stomach Smooth Muscle stomach
27 chr1:47834200-47840000 Strong transcription Fetal Intestine Small intestine
28 chr1:47834200-47841400 Strong transcription Adipose Nuclei Adipose
29 chr1:47834200-47841400 Strong transcription Fetal Stomach stomach
30 chr1:47834200-47841400 Strong transcription Rectal Mucosa Donor 31 rectum
31 chr1:47834200-47841600 Strong transcription Primary hematopoietic stem cells short term culture blood
32 chr1:47834200-47841600 Strong transcription Duodenum Smooth Muscle Duodenum
33 chr1:47834200-47841600 Strong transcription Fetal Muscle Trunk muscle
34 chr1:47834200-47841600 Strong transcription HUVEC blood vessel
35 chr1:47834200-47841800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:47834200-47841800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
37 chr1:47834200-47841800 Strong transcription Fetal Intestine Large intestine
38 chr1:47834200-47842400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:47834200-47842400 Strong transcription K562 blood
40 chr1:47834200-47842800 Strong transcription Liver Liver
41 chr1:47834200-47842800 Strong transcription Placenta Placenta
42 chr1:47834200-47843000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr1:47834200-47843000 Strong transcription Primary T cells from cord blood blood
44 chr1:47834200-47843000 Strong transcription Colon Smooth Muscle Colon
45 chr1:47834200-47843000 Strong transcription Fetal Thymus thymus
46 chr1:47834200-47843200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr1:47834200-47843200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr1:47834200-47843200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr1:47834200-47843200 Strong transcription Skeletal Muscle Female skeletal muscle
50 chr1:47834200-47843200 Strong transcription Osteobl bone

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Last update: Aug 31, 2015