The 2.0 version of rSNPBase

Variant report

Variant rs17103177
Chromosome Location chr1:47853722-47853723
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47800600-47854600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:47824000-47853800 Weak transcription Psoas Muscle Psoas
3 chr1:47827800-47854800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr1:47832200-47854200 Weak transcription Esophagus oesophagus
5 chr1:47833600-47854200 Weak transcription H9 Cell Line embryonic stem cell
6 chr1:47833600-47854200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:47836400-47854400 Weak transcription Brain Cingulate Gyrus brain
8 chr1:47836600-47854800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:47839400-47854200 Weak transcription Pancreas Pancrea
10 chr1:47839400-47854200 Weak transcription Right Ventricle heart
11 chr1:47840200-47854200 Weak transcription Rectal Smooth Muscle rectum
12 chr1:47841400-47854200 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:47841400-47854200 Weak transcription Brain Angular Gyrus brain
14 chr1:47841600-47854800 Weak transcription Brain Hippocampus Middle brain
15 chr1:47844600-47853800 Weak transcription Hela-S3 cervix
16 chr1:47845400-47854400 Weak transcription HMEC breast
17 chr1:47845600-47854400 Weak transcription Brain Inferior Temporal Lobe brain
18 chr1:47846800-47854200 Weak transcription Gastric stomach
19 chr1:47847000-47854400 Weak transcription Colonic Mucosa Colon
20 chr1:47847000-47854600 Weak transcription Primary T cells fromperipheralblood blood
21 chr1:47847000-47854600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr1:47847200-47854200 Weak transcription Brain Anterior Caudate brain
23 chr1:47847200-47854200 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr1:47847400-47854200 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr1:47847400-47858600 Weak transcription Muscle Satellite Cultured Cells --
26 chr1:47847600-47854200 Weak transcription Fetal Brain Female brain
27 chr1:47847600-47854200 Weak transcription Fetal Kidney kidney
28 chr1:47847600-47854800 Weak transcription Stomach Smooth Muscle stomach
29 chr1:47847600-47858800 Weak transcription HSMMtube muscle
30 chr1:47847600-47865200 Weak transcription GM12878-XiMat blood
31 chr1:47847600-47872800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:47848000-47854200 Weak transcription HSMM muscle
33 chr1:47848400-47854400 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr1:47849000-47854400 Weak transcription Liver Liver
35 chr1:47849200-47854200 Weak transcription K562 blood
36 chr1:47849200-47855800 Weak transcription Dnd41 blood
37 chr1:47849400-47854200 Weak transcription Duodenum Mucosa Duodenum
38 chr1:47849400-47856200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:47849400-47858800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:47849600-47856000 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr1:47850200-47854200 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr1:47852600-47855000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:47853000-47854200 Enhancers NHDF-Ad bronchial
44 chr1:47853000-47854400 Enhancers Fetal Muscle Leg muscle
45 chr1:47853000-47856000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:47853200-47854600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
47 chr1:47853200-47855000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr1:47853200-47857400 Enhancers HepG2 liver
49 chr1:47853400-47854200 Enhancers Fetal Lung lung
50 chr1:47853400-47854800 Enhancers Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015