Variant report

Variant	rs12024629
Chromosome Location	chr1:56337669-56337670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10158230	0.85[EUR][1000 genomes]
rs10789009	0.89[AMR][1000 genomes]
rs11206668	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206669	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11206670	0.84[EUR][1000 genomes]
rs11206671	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12132347	0.82[EUR][1000 genomes]
rs12728204	0.82[EUR][1000 genomes]
rs3924189	0.84[EUR][1000 genomes]
rs4309021	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4540693	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4589149	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4926698	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6663328	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7539074	0.85[EUR][1000 genomes]
rs7546553	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9633424	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56326000-56342000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56332400-56339200	Enhancers	NHDF-Ad	bronchial
3	chr1:56333800-56340000	Weak transcription	Aorta	Aorta
4	chr1:56334800-56340800	Weak transcription	Psoas Muscle	Psoas
5	chr1:56335200-56339000	Weak transcription	Fetal Lung	lung
6	chr1:56335200-56342000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:56336200-56337800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:56336200-56338200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:56336200-56339600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:56336400-56338800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:56336600-56342000	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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