Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10158230	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206668	0.99[EUR][1000 genomes]
rs11206669	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206670	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11206671	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024629	0.85[EUR][1000 genomes]
rs12058859	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12132347	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12411257	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12727910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12728204	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924189	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3934487	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3935996	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129669	0.81[EUR][1000 genomes]
rs4309021	1.00[EUR][1000 genomes]
rs4540693	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589149	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926698	1.00[EUR][1000 genomes]
rs6663328	1.00[EUR][1000 genomes]
rs7546553	0.99[EUR][1000 genomes]
rs7549389	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9633424	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7539074	MAGOH	cis	cerebellum	SCAN
rs7539074	HSPB11	cis	parietal	SCAN
rs7539074	TMEM59	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56295200-56320400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:56310400-56321200	Weak transcription	Psoas Muscle	Psoas
3	chr1:56315000-56323200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:56319400-56321200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56319600-56321400	Enhancers	Ovary	ovary
6	chr1:56319800-56320600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56319800-56320600	Enhancers	NHLF	lung
8	chr1:56319800-56321400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:56320000-56320800	Enhancers	NHDF-Ad	bronchial
10	chr1:56320000-56323200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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