Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10158230	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11206668	0.84[EUR][1000 genomes]
rs11206669	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11206670	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206671	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12024629	0.82[EUR][1000 genomes]
rs12058859	0.83[AMR][1000 genomes]
rs12411257	0.85[AMR][1000 genomes]
rs12727910	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12728204	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3924189	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3934487	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3935996	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4129669	0.84[AFR][1000 genomes]
rs4309021	0.85[EUR][1000 genomes]
rs4540693	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4589149	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4926698	0.85[EUR][1000 genomes]
rs6663328	0.85[EUR][1000 genomes]
rs7539074	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7546553	0.84[EUR][1000 genomes]
rs7549389	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9633424	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56341600-56344200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56341800-56342400	Enhancers	Adipose Nuclei	Adipose
3	chr1:56341800-56342600	Enhancers	Ovary	ovary
4	chr1:56341800-56342800	Enhancers	Aorta	Aorta
5	chr1:56342000-56342600	Enhancers	Right Atrium	heart
6	chr1:56342000-56342800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:56342000-56342800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:56342000-56342800	Enhancers	Fetal Muscle Leg	muscle
9	chr1:56342000-56342800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr1:56342000-56342800	Enhancers	NHDF-Ad	bronchial
11	chr1:56342000-56343000	Enhancers	Osteobl	bone
12	chr1:56342000-56343600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:56342000-56343800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr1:56342200-56342400	Enhancers	Fetal Heart	heart
15	chr1:56342200-56343000	Enhancers	Colon Smooth Muscle	Colon
16	chr1:56342200-56343200	Weak transcription	Psoas Muscle	Psoas
17	chr1:56342200-56345200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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